LLM-based ontological extraction tools, including SPIRES
Linked Open Data Modeling Language
Schema and generated objects for biolink data model and upper ontology
Simple Standard for Sharing Ontology Mappings
A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions…
Link Modeling Language (LinkML) model
Data transformation framework for LinkML data models
SQL and SQLite builds of OWL ontologies
Automated assistance for the schema development lifecycle
Python toolkit for SSSOM mapping format
Disease Mechanisms KB
Structure your data in a FAIR way using google sheets or TSVs. These are then converted to LinkML, and from there other formats
National Microbiome Data Collaborative (NMDC) unified data model
Mapping between LinkML schemas
Runtime support for linkml generated models
A fast, portable (JS/JVM/native), and robust implementation of LinkML for cross-language data modeling
A knowledge extraction tool that uses a large language model to extract semantic information from text
A copier template for your next LinkML project
Logic plus python types
wrapper for multiple linkml storage engines
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